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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10284204_10284628_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10284204 - 10284628
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATGGTCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATGTAATAACT
Flanking Amino Acid:
RFIVSRMKERAIDLNKKGKD
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.9
0.56
0.9
70.5
40.6
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
48.3
-0
1.9
69.62
40.7

Associated Gene:

Gene:
ZMYND11
Ensembl Gene ID:
ENSAPLG00000015491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016210
10240789 - 10301015
60227