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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10284722_10286200_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10284722 - 10286200
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTGTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
TTTTTTTGTATA
Flanking Amino Acid:
SAVDVPTIQEKVNEGKYRSY
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.9
41.6
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
86.6
0.82
0.8
84.2
30.9
Minor 5ss
34.1
-1.8
3.6
46.6
48.7
Minor BPS
53.5
0.1
1.7
71.08
35.7

Associated Gene:

Gene:
ZMYND11
Ensembl Gene ID:
ENSAPLG00000015491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016210
10240789 - 10301015
60227