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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102861290_102861475_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102861290 - 102861475
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TACCTTGTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTATTAAACT
Flanking Amino Acid:
HQPLYFGKIPANLDTPWLPV
Intron Amino Acid Position:
1365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
100
1.24
0.5
100
0
Major PPT
74
0.54
0.9
69
36.7
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
67.5
0.63
1.8
88.66
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560