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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102861596_102861961_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102861596 - 102861961
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATACACC
Flanking Amino Acid:
LYNGQWHTIAVSQKGNAVQL
Intron Amino Acid Position:
1325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.6
0.8
0.8
80.4
31.6
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
48.5
-0.1
2.3
68.72
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560