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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102862056_102863242_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102862056 - 102863242
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
AACTATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GGTAACTTAACA
Flanking Amino Acid:
YLTVYMEEGKIIAAGNSGAG
Intron Amino Acid Position:
1294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.2
0.59
0.9
68.8
40.9
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
65
0.47
1.6
71.49
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560