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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102863371_102863503_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102863371 - 102863503
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CACTCTTTAATT
Flanking Amino Acid:
FFKEGGYIAIDNLRMGLDFR
Intron Amino Acid Position:
1251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.9
0.67
0.9
73.5
36.5
Minor 5ss
34.1
-1.8
3.3
45.5
44.6
Minor BPS
71.7
0.76
1.2
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560