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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102863664_102864457_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102863664 - 102864457
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
AATATACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATGTTTTGAAAT
Flanking Amino Acid:
LGGLPSLKRQSIPVKSFKGC
Intron Amino Acid Position:
1198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.8
0.51
1
67.6
42.8
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
56.5
0.28
1.5
71.99
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560