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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102864599_102865251_R

Intron Information:

Intron Rank:
32
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
102864599 - 102865251
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCACCCTGCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACATTC
Flanking Amino Acid:
TKYNDGQWHNVVFSRDGKNV
Intron Amino Acid Position:
1151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
49.2
-0
1.1
47.2
34.2
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
45.2
-0.3
2
60.01
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560