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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102865442_102865842_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102865442 - 102865842
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
CTTTCCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACGCAT
U12 Branch Point Sequence:
TACGCATGAACA
Flanking Amino Acid:
YTFSPPSPTDRLHFSVDIRT
Intron Amino Acid Position:
1087

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
62.2
0.3
1.3
71.6
36.4
Major PPT
83.5
0.75
0.7
77
25.2
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
49.9
-0
1.9
62.8
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560