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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102866007_102866283_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102866007 - 102866283
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
CCTTCTATAAAA
Flanking Amino Acid:
KNPLRFKMLKNEKYVDHLTD
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
85.7
0.8
0.8
79.8
32.3
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
54.7
0.14
1.8
65.1
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560