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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102866429_102867938_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102866429 - 102867938
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGGC
5'SS Class:
major
3'SS Sequence:
TTCTTCACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GTTTTCTTCACT
Flanking Amino Acid:
EGCISNIFIERTGQYPEVQN
Intron Amino Acid Position:
984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.1
39.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
78.5
0.64
0.8
71.2
34.5
Minor 5ss
39.2
-1.2
3.1
53
44.1
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560