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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102868747_102869242_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102868747 - 102869242
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
AATTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
CCTGCATTAAAC
Flanking Amino Acid:
TGTLLNYNLRPDILTIFLSP
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.7
37.5
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
80.2
0.68
0.8
78.2
35.3
Minor 5ss
39.4
-1.2
2.8
43.7
43.9
Minor BPS
50.4
-0
1.9
60.42
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560