About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102870147_102870511_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
102870147 - 102870511
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCCCTGAAACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATTCCCTGAAAC
Flanking Amino Acid:
LGGIPSSLRKQFNITTPPFR
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
59.3
0.21
1
51.8
40.7
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
63.6
0.41
1.6
73.34
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560