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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102871395_102872137_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102871395 - 102872137
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTACCA
Flanking Amino Acid:
EGIIFFAANEDQFISVLIKD
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.1
0.59
0.9
70.1
34.5
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
71
0.66
1.6
79.69
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560