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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102872289_102873086_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102872289 - 102873086
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTCTCATAATT
Flanking Amino Acid:
LNTTEVQPCRRYKEESDQNY
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.8
0.67
0.9
73.6
40.3
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
63.4
0.5
1.6
80.67
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560