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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102873221_102873709_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102873221 - 102873709
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
CACTATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATG
Flanking Amino Acid:
YVGGYPPDFRPPRSLDYPHY
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.1
56.1
43
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
0.9
72.4
37
Minor 5ss
30.7
-2.2
3.1
31.7
42.2
Minor BPS
72.9
0.58
1.2
71.67
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560