About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102873873_102873970_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102873873 - 102873970
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAGAC
5'SS Class:
major
3'SS Sequence:
GTTTTGGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGTGATATGATA
Flanking Amino Acid:
EAIMDQVKLQRIYQYVKLNY
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
64.5
33.5
Major BPS
75.8
0.64
1
65.8
41
Major PPT
76.1
0.59
1
73.5
41.9
Minor 5ss
36.2
-1.6
3.4
49.4
47.1
Minor BPS
44.6
-0.4
1.8
56.48
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560