Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102874123_102875521_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

102874123 - 102875521

Intron Length:

1399

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTGCTGTTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTAACATTAATC

Flanking Amino Acid:

RFVLYLGNKDASKDYIGMAV

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

89.1

24.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.4

0.55

0.9

37.3

Minor 5ss

41.7

-0.9

2.8

41.5

Minor BPS

64.9

0.45

1.6

73.67

36.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008462

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008948

102861144 - 102899703

38560