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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102875699_102876667_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102875699 - 102876667
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCTTACCA
Flanking Amino Acid:
IQQARDAANKVAIPMRFNGS
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
68
42.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.3
0.84
0.8
82.2
34.2
Minor 5ss
38.4
-1.3
2.8
51.7
44.7
Minor BPS
76.8
0.84
1.5
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560