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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10287575_10288229_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10287575 - 10288229
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCTTATTTATAT
Flanking Amino Acid:
RMLYKDTCHELDELQLCKNC
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
48.7
-0
1.9
66.79
43.7

Associated Gene:

Gene:
ZMYND11
Ensembl Gene ID:
ENSAPLG00000015491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016210
10240789 - 10301015
60227