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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102877361_102877720_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102877361 - 102877720
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGAGA
5'SS Class:
major
3'SS Sequence:
CACTGTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCTGGGTAAAA
Flanking Amino Acid:
QARETEGKLKAIGPTLEDMT
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
60.7
45.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.5
0.64
0.9
72.2
37.5
Minor 5ss
36.1
-1.6
3.3
49.1
46.7
Minor BPS
40.2
-0.7
2.8
59.76
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560