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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102877821_102878415_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102877821 - 102878415
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTCTATTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTTCTATTACCA
Flanking Amino Acid:
AGTAADSALSTVKREDLSGK
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.2
0.61
0.9
70.5
39
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
49.6
-0
1.9
65.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560