About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102878558_102879611_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102878558 - 102879611
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTACGTTAT
5'SS Class:
major
3'SS Sequence:
CTGTTACCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
ACTCTGTTACCT
Flanking Amino Acid:
SLQDLAKQLEEIKNNARKDE
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
68.8
38.8
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
76.9
0.6
0.9
69.8
35.7
Minor 5ss
42.1
-0.9
3.1
53.9
44.5
Minor BPS
46.7
-0.1
2.2
66.82
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560