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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102878_104042_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102878 - 104042
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TGTGGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAG
U12 Branch Point Sequence:
TCTCTATTAAGT
Flanking Amino Acid:
ACVWLEEELKTFKRILVLIS
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.3
72.7
44.5
Major BPS
67.8
0.44
1.5
75.9
36.3
Major PPT
65
0.34
1
57.1
43.4
Minor 5ss
44.4
-0.6
2.8
57
40.8
Minor BPS
53.8
0.2
1.9
73.98
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009201
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009615
100810 - 108472
7663