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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102880440_102881384_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102880440 - 102881384
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCATCTTTTATT
Flanking Amino Acid:
ENGVLLEDIKKRIEETNEQQ
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86.1
0.81
0.7
85.2
29.2
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
63.4
0.5
1.6
76.05
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560