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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102881582_102882713_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102881582 - 102882713
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
CCCGATAATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTGAACAAAACT
Flanking Amino Acid:
AVKERKEAQLLLERVKNELQ
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
65.5
38.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
61.8
0.27
1
54.4
39
Minor 5ss
35.1
-1.7
3.5
49.7
46.1
Minor BPS
46.9
-0.1
2.1
70.87
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560