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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102882882_102883461_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102882882 - 102883461
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
AATTTGACAATT
Flanking Amino Acid:
RIQIVVNNIQVLLEQIAGTN
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
96.1
1.04
0.5
95.6
14.9
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
43
-0.4
2.3
64.45
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560