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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10288308_10288863_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10288308 - 10288863
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTATGTTGC
5'SS Class:
weak_major
3'SS Sequence:
ACATTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TATCCAATAATA
Flanking Amino Acid:
RPDNWFCYPCIPNHELVWAK
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.4
56.7
43.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82.3
0.73
0.9
76.9
36.4
Minor 5ss
47.6
-0.2
2.4
56.2
42
Minor BPS
52.6
0.08
1.9
68.9
36.6

Associated Gene:

Gene:
ZMYND11
Ensembl Gene ID:
ENSAPLG00000015491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016210
10240789 - 10301015
60227