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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102883787_102884314_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
102883787 - 102884314
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTAA
5'SS Class:
major
3'SS Sequence:
TGCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
ATTTATTGGATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
63
40
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
89.3
0.88
0.7
87.9
29.5
Minor 5ss
40.5
-1.1
3.4
55.4
48.8
Minor BPS
50.7
0.02
1.6
65.93
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560