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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102884467_102885777_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
102884467 - 102885777
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ATTGTCCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTTTGCTCATTG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
74.8
0.56
0.8
71.5
35
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
45.2
-0.5
2.2
54.99
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008948
102861144 - 102899703
38560