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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10292920_10294724_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10292920 - 10294724
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGGAT
U12 Branch Point Sequence:
GGTATCTGGATT
Flanking Amino Acid:
RNQSMELKKEEPEPETEAVS
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
58.9
0.22
1.5
59.3
47.1
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
49.8
0.06
1.5
65.72
38.7

Associated Gene:

Gene:
ZMYND11
Ensembl Gene ID:
ENSAPLG00000015491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016210
10240789 - 10301015
60227