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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102935087_102938512_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
102935087 - 102938512
Intron Length:
3426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTCATCAGA
5'SS Class:
weak_major
3'SS Sequence:
TGCCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
GACAGTGTGACA
Flanking Amino Acid:
CEGKVADYLYPTVSPTVKVT
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.4
0.06
1.4
54.7
44.1
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
81.8
0.71
0.8
76.5
32.1
Minor 5ss
36.7
-1.5
2.8
45.2
42.7
Minor BPS
38.7
-0.9
2.2
43.95
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024387
102934967 - 102971486
36520