About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102942045_102943020_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
102942045 - 102943020
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CAAACTTGCTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCTCAAACT
Flanking Amino Acid:
VPASAPDGCIPCSCNSEHAE
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
56.6
0.15
1
54.2
40.7
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
63.7
0.51
2
88.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024387
102934967 - 102971486
36520