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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102943112_102947381_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102943112 - 102947381
Intron Length:
4270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
EGGGVCINCQHNTAGINCEK
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79.4
0.66
0.9
76
37.8
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024387
102934967 - 102971486
36520