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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102947501_102950500_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102947501 - 102950500
Intron Length:
3000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TTAACTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GGAATATTAACT
Flanking Amino Acid:
ATAGNTNICEPCNCFGHATD
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.8
38.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
83.5
0.75
0.8
81
36.2
Minor 5ss
33.4
-1.9
2.8
41.6
38.2
Minor BPS
54.6
0.22
1.7
68.69
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024387
102934967 - 102971486
36520