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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10294998_10296097_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10294998 - 10296097
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTACGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTTGCTGAATT
Flanking Amino Acid:
ERVVREAVEKLRTEMEEEKR
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
37.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
76.9
0.61
1
74.4
35.1
Minor 5ss
38
-1.4
3.3
57.1
47
Minor BPS
61.3
0.43
1.9
80.5
41.8

Associated Gene:

Gene:
ZMYND11
Ensembl Gene ID:
ENSAPLG00000015491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016210
10240789 - 10301015
60227