About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102952653_102955122_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102952653 - 102955122
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GATTCTTCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTCTTGTGATT
Flanking Amino Acid:
AQRDPTVTRRYYYSIKDISV
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
71.4
0.48
0.8
66.3
35.3
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
49.7
0.06
2
75.19
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024387
102934967 - 102971486
36520