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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102955294_102957493_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
102955294 - 102957493
Intron Length:
2200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTCAAATAC
5'SS Class:
weak_major
3'SS Sequence:
CCTATTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TATGTTGTAACA
Flanking Amino Acid:
FARNVVKTVNIVVSLVNGRP
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.3
0.13
1.3
58.4
35.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
81.8
0.72
0.8
80.4
31.5
Minor 5ss
35.4
-1.7
3.2
46.6
42.2
Minor BPS
50.8
0.02
2.1
67.28
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024387
102934967 - 102971486
36520