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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102965954_102971201_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102965954 - 102971201
Intron Length:
5248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGTGT
5'SS Class:
major
3'SS Sequence:
AACTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTAAATTAACT
Flanking Amino Acid:
AAAPLGRAIQGQFCDYCNAA
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
61.3
45.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.3
0.46
1
65.6
44.6
Minor 5ss
42.6
-0.8
3.5
64.5
46.9
Minor BPS
59.8
0.39
1.9
79.31
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029255
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024387
102934967 - 102971486
36520