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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102987478_102992404_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102987478 - 102992404
Intron Length:
4927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
EQGMLRMSFKKETPLANAAF
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.1
0.83
0.8
82.4
34
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
ANKRD29
Ensembl Gene ID:
ENSAPLG00000008438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032615
102986985 - 103013989
27005