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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102992516_102994541_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
102992516 - 102994541
Intron Length:
2026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGCACA
5'SS Class:
weak_major
3'SS Sequence:
TCTTTATTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTCTCTTTATT
Flanking Amino Acid:
GRVDVDCKDSLGTTALMVAS
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.2
57.2
41.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.3
0.77
0.8
77
36.1
Minor 5ss
47.7
-0.2
2.5
59
45.3
Minor BPS
67.4
0.63
1.6
85.04
35.1

Associated Gene:

Gene:
ANKRD29
Ensembl Gene ID:
ENSAPLG00000008438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032615
102986985 - 103013989
27005
ENSAPLT00000008757
102978017 - 103013989
35973