About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102996519_103002126_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102996519 - 103002126
Intron Length:
5608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGCTTTTTCACA
Flanking Amino Acid:
FGASTEFKNKDGGTALLAAC
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.7
0.76
0.8
79.1
32.9
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
56.6
0.2
1.7
66.82
40.3

Associated Gene:

Gene:
ANKRD29
Ensembl Gene ID:
ENSAPLG00000008438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008757
102978017 - 103013989
35973
ENSAPLT00000032615
102986985 - 103013989
27005