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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103032869_103033455_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103032869 - 103033455
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGCTCACTGACT
Flanking Amino Acid:
NLQLPLQFLSRCPSCFYNLI
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.8
0.74
0.7
80.9
24.2
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
51.8
0.14
2
74.39
42

Associated Gene:

Gene:
NPC1
Ensembl Gene ID:
ENSAPLG00000007737
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035568
103030423 - 103051010
20588
ENSAPLT00000008095
103025231 - 103051010
25780