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Intron Name: Anas_platyrhynchos_platyrhynchos_2_103039450_103040388_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103039450 - 103040388

Intron Length:

939

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

TCTTATTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTTTCTTATTC

Flanking Amino Acid:

FPWLVLGGYDADNYNNATAL

Intron Amino Acid Position:

560

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

1.1

65.5

39.9

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

85.9

0.81

0.8

80.2

31.6

Minor 5ss

31.8

-2.1

3.4

40.2

41.3

Minor BPS

72.6

0.69

1.5

81.59

Associated Gene:

Gene:

NPC1

Ensembl Gene ID:

ENSAPLG00000007737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035568

103030423 - 103051010

20588

ENSAPLT00000008095

103025231 - 103051010

25780