Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103040492_103041473_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103040492 - 103041473

Intron Length:

982

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

CCTTTCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

TATCCTTTAAAG

Flanking Amino Acid:

KLMKALAWEKEFINFLKNYH

Intron Amino Acid Position:

594

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

75.5

40.6

Major BPS

0.7

0.9

79.6

29.1

Major PPT

85.5

0.8

0.6

84.4

23.5

Minor 5ss

40.6

-1

2.8

48.1

41.6

Minor BPS

65.8

0.36

1.5

67.66

39.4

Associated Gene:

Gene:

NPC1

Ensembl Gene ID:

ENSAPLG00000007737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035568

103030423 - 103051010

20588

ENSAPLT00000008095

103025231 - 103051010

25780