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Intron Name: Anas_platyrhynchos_platyrhynchos_2_103044979_103045764_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103044979 - 103045764

Intron Length:

786

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GCTATTTTGTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TAAATATTAAAT

Flanking Amino Acid:

QIFSAAEISSYTRIGYAPSS

Intron Amino Acid Position:

940

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

86.4

28.9

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

69.3

0.43

69.3

41.6

Minor 5ss

43.5

-0.7

2.9

62.1

37.1

Minor BPS

51.9

0.14

1.7

69.64

40.1

Associated Gene:

Gene:

NPC1

Ensembl Gene ID:

ENSAPLG00000007737

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035568

103030423 - 103051010

20588

ENSAPLT00000008095

103025231 - 103051010

25780