About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103048360_103049169_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103048360 - 103049169
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTATCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTTTCCTATCT
Flanking Amino Acid:
NAVSLVNLVMSCGIAVEFCS
Intron Amino Acid Position:
1167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.9
0.69
0.8
74.6
35.3
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
57.2
0.3
2
80
42.1

Associated Gene:

Gene:
NPC1
Ensembl Gene ID:
ENSAPLG00000007737
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035568
103030423 - 103051010
20588
ENSAPLT00000008095
103025231 - 103051010
25780