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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103049284_103050113_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
103049284 - 103050113
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTTAATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CGCATCTTAATT
Flanking Amino Acid:
EEALSHVGSSVFSGITLTKF
Intron Amino Acid Position:
1205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.3
0.75
0.8
76.7
36.2
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
61.7
0.45
1.4
68.53
42.9

Associated Gene:

Gene:
NPC1
Ensembl Gene ID:
ENSAPLG00000007737
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008095
103025231 - 103051010
25780
ENSAPLT00000035568
103030423 - 103051010
20588