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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103052277_103052375_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
103052277 - 103052375
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
TCTTCTGGTACA
Flanking Amino Acid:
RLRGNPSFTPDSAGV*
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
61.4
0.28
1
53
33.7
Major PPT
76.9
0.6
1
71.7
38.2
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
45.3
-0.3
2.4
63.43
43

Associated Gene:

Gene:
RMC1
Ensembl Gene ID:
ENSAPLG00000006991
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021022
103052032 - 103067349
15318