Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_103052602_103052742_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103052602 - 103052742

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TGATTGATTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTGAT

U12 Branch Point Sequence:

CTGTGATTGATT

Flanking Amino Acid:

AHQLSLDMLKRLSTANDEIV

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

84.6

33.2

Major BPS

70.8

0.52

1.2

63.4

44.3

Major PPT

74.5

0.55

70.5

44.2

Minor 5ss

-0.3

2.9

67.1

37.8

Minor BPS

48.1

-0

2.1

67.49

44.1

Associated Gene:

Gene:

RMC1

Ensembl Gene ID:

ENSAPLG00000006991

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021022

103052032 - 103067349

15318

ENSAPLT00000007274

103051456 - 103067349

15894